Files for Param Pravega Supercomputer

Below I have listed the bashrc, jobscript, and Makefile needed to the run the NON-GPU version of the GTC Code for Tokamak and Stellarator in Param Pravega.

GTC v4.6U - 17b4a12(Commit)

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Bashrc

If your shell is BASH, then add the below code in a .bashrc file in your HOME directory of Param Pravega Supercomputer

# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
        . /etc/bashrc
fi

# User specific aliases and functions
module load spack
. /home-ext/apps/spack/share/spack/setup-env.sh
spack load /mxkpjli netcdf-fortran@4.5.3%intel@18.0.5
spack load petsc@3.16.2%intel@2021.4.0 /qb3bzz

For CSH shell replace the statements of above after "User specific aliases.." by:

module load spack
source /home-ext/apps/spack/share/spack/setup-env.csh
spack load /mxkpjli netcdf-fortran@4.5.3%intel@18.0.5
spack load petsc@3.16.2%intel@2021.4.0 /qb3bzz

Then save the file and source the file from your home directory as,

source .bashrc

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Job-Script

Below is a list of different simulations one can submit in Param-Pravega for GTC.

Tokamak

1. (To be Updated) Tokamak: Linear Adiabatic Electron Response Jobscript (Electrostatic)
2. (To be Updated) Tokamak: Non-Linear Adiabatic Electron Response Jobscript (Electrostatic)
3. (To be Updated) Tokamak: Kinetic Electron Response Jobscript (Electrostatic)

Stellarator

1. Stellarator: Linear Adiabatic Electron Response Jobscript (Electrostatic)
2. (To be Updated) Stellarator: Non-Linear Adiabatic Electron Response Jobscript (Electrostatic)
3. (To be Updated) Stellarator: Kinetic Electron Response Jobscript (Electrostatic)

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Tokamak:

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Tokamak: Linear Adiabatic Electron Response Jobscript (Electrostatic)

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Tokamak: Non-Linear Adiabatic Electron Response Jobscript (Electrostatic)

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Tokamak: Kinetic Electron Response Jobscript (Electrostatic)

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Stellarator:

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Stellarator: Linear Adiabatic Electron Response Jobscript (Electrostatic)

For Stellarators,

#!/bin/bash
#SBATCH -N 8
#SBATCH --ntasks-per-node=48
#SBATCH --ntasks-per-core=2
#SBATCH --time=00:04:00
#SBATCH --job-name=gtcx
#SBATCH --error=%J.error
#SBATCH --output=%J.output
#SBATCH --partition=highmemory

cd $SLURM_SUBMIT_DIR

module load spack
. /home-ext/apps/spack/share/spack/setup-env.sh
spack load /mxkpjli netcdf-fortran@4.5.3%intel@18.0.5
spack load petsc@3.16.2%intel@2021.4.0 /qb3bzz
spack load openmpi fabrics=auto /nncedca

export LD_LIBRARY_PATH=/home/ext/apps/spack/opt/spack/linux-centos7-skylake_avx512/intel-18.0.5/netcdf-fortran-4.5.3-mxkpjlifwez6uij2qnz2pmn5kavlmpng/lib:/home/ext/apps/spack/opt/spack/linux-centos7-cascadelake/intel-2021.4.0/petsc-3.16.2-qb3bzznpghhokvmeitoebasgnvct5sau/lib:$LD_LIBRARY_PATH


export I_MPI_FALLBACK=disable
export I_MPI_FABRICS=shm:dapl
export I_MPI_DEBUG=9

export OMP_NUM_THREADS=1
mkdir -p restart_dir1
mkdir -p restart_dir2
mkdir -p phi_dir
mkdir -p trackp_dir


ulimit -s unlimited # stack
ulimit -d unlimited # data area
ulimit -c unlimited

mpirun -n 378 ./gtc

In above 378 MPI processes are submitted as mtoroidal = 9 (For W7-X), i.e. number of MPI process is a multiple of mtoroidal value.

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Stellarator: Non-Linear Adiabatic Electron Response Jobscript (Electrostatic)

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Stellarator: Kinetic Electron Response Jobscript (Electrostatic)

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Makefile For Param-Pravega

Follow the link to get the code for Makefile_Param for running GTCv4.6U (Commit - 17b4a12) for the case of ICONFIG = TOROIDAL3D(Stellarators)

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Last Updated: 31 July 2023